All in 1 Research Tool#

Note

Quick paragraph about the importance of taking notes

Doing Research#

The scientific method is well established since the 17^th century, and every step rely on carefull notes to document the process. Very little progress (nor investigations or effort) have been made in note taking capabilities to reflect the recent technological advancement of our society and enhance scientific notes. I believe my online note taking routine is a great improvement (with respect to hand written notes) and it gives me multiple benefits (cf card right)

../../../_images/The_Scientific_Method.svg

Figure X Find source wikimedia and implement in list#

To perform all those tasks we dispose mainly of two equipments

Brain & Notepad

Computer

Jupyter Book

A command-line interface for building beautiful, publication-quality books and documents from computational content.

JupyterBook

Jupyter Ecocystem

Note

Dropdown tab with all jupyter product

Jupyter Notebook
JupyterLab
JupyterBook
Myst
Binder

Sphinx Documentation Engine

Markdown and very few lines of code

Open Science Stack#

Open Source

Note

Implement in accordance with jb-tool structure !!

Data Analysis#

Note

Insérer ici les différents outils open sources accessible au chercheur

Mettre en lumière qu’une infrastructure JB can allow for a publication framework for all those outputs

Python#

Explain common Python etc .. .

Common Workflows shared between many scientists

Note

To consider

Semantic web workflow
Knowledge graph

The first thing I hear when I tell people that I am writing a website is: Oh that must be difficult. It is actually easy and rely on two tools, both developped by the Executable Books organization. They both gives the opportunity to build a static website from a collection of markdown files.

‣ Tools #

Open Toolbox

For PhD Students and Researchers interested in Open Science

Publishing my research online has proven extremely challenging and I had to learn many skills along the way (hopefully the developper community is incredibely open but the information is scattered all over the internet). While learning and implementing the solutions I found, I took time to developpe some tutorials to help like minded scientist to follow my path.

Open Science